The Department of Chemistry, Biology and Biotechnology provides the following courses:

 

CHEMISTRY

Venue: via Elce di Sotto, 8 (map)

President: Prof.ssa N. Balucani - 075.585.5507 - This email address is being protected from spambots. You need JavaScript enabled to view it.

Bachelor degree in Chemistry

Master degree in Chemical Sciences

Educational Infrastructures (Lecture rooms and Laboratories)

 

BIOLOGY

Venue: via del Giochetto (map)

President: Prof. R. Venanzoni - 075.585.7376 - This email address is being protected from spambots. You need JavaScript enabled to view it.

Bachelor degree in Biological Sciences

Master Degree in Biology (new)

Master degree in Molecular and Environmental Sciences

Master degree in Naturalistic and Environmental Sciences and Technologies

 

BIOTECHNOLOGY

Venue: via del Giochetto (map)

Bachelor degree in Biotechnology (President: Prof.ssa S. Martino - 075.585.7442 - This email address is being protected from spambots. You need JavaScript enabled to view it.)

Master degree in Molecular and Industrial Biotechnology (President: Prof.ssa S. Martino - 075.585.7442 - This email address is being protected from spambots. You need JavaScript enabled to view it.)

Coordinator: Prof.ssa S.Martino  (This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Erasmus and Internationalization

Internship activity

International Degrees

Guidance

Learning objectives

Mentoring

Online Course on Laboratory Prevention and Safety

Teaching Organization

Thesis

The group of Integrated Physiology and Preclinic took its first steps in October 2015 with the SIR funded project “Novel nanoparticles-based approach to brain cancer therapy”. The group consists of six units that interact synergistically with the aim of research, teaching, third mission and service to companies. The related laboratories are equipped with instruments that have been purchased starting from 2015, in relation to the funded projects, while some are on loan for free use, made available by companies with which the group collaborates through third mission and service activities. The personnel belonging to the group consists of Associate Professor Bernard Fioretti, three post-doc researchers, five PhD students and a variable number of graduate and undergraduate students from the master’s degree courses in biology and biotechnology, Food Economy and Culture (ECOCAL) and Agricultural Food Science and Technology (STAGAL).

Research areas

The areas of interest are the study of ion channels through the patch-clamp technique and functional imaging on the themes of fertility, anti-tumor therapy study and nanomedicine, and for the development of nutraceutical products.

Unit of Electrophysiology. The electrophysiology unit aims to study the electrical activity of ion channels and how they are influenced by interaction with external agents such as molecules and nanoparticles.

Unit of Functional Imaging. The functional imaging unit aims to study the electrical activity of cells using calcium indicators through microscopy techniques.

Unit of Cellular and Molecular Biology. The cellular and molecular biology unit deals with the culture and preparation of cells to be used for electrophysiology and functional imaging studies. It also deals with proteomics and metabolomics as support activities for the interpretation of results obtained from electrophysiology and functional imaging units.

Unit of Nanocompounds. The nanocompounds unit deals with the synthesis of organic molecules and nanoparticles and their conjugation with organic molecules of biomedical interest.

Unit of Food Analytical Chemistry. The analytical chemistry unit performs analysis of nutraceutics and provides support activities to the group research lines, using chromatography techniques, mass spectrometry and UV-Vis spectrophotometry.

Unit of Molecular Dynamics and modeling. The molecular dynamics and modeling unit deals with the development of models for the analysis and processing of data produced by other units. It also deals with the study of chemical properties related to the systems studied by electrophysiology and functional imaging units through classical, quantum-chemical and molecular dynamics techniques.

Staff

Prof. Bernard Fioretti, Associate Professor

Dr. Francesco Ragonese, Post-Doc

Dr. Paola Sabbatini, Post-Doc

Dr. Andrea Biagini, PhD Student

Dr. Elko Gliozheni, PhD Student

Dr. Paola Quellari, PhD Student

Dr. Luana Sallicandro, PhD Student

Funded Projects

2023 - “Valorizzazione del potenziale terapeutico del resveratrolo nella medicina personalizzata mediante combinazione con altri principi attivi in formulazioni innovative – VAPORE”. Funded by Ministero per le Imprese e il Made in Italy (MIMIT). (Local coordinator: Bernard Fioretti)

2023 – “Ruolo della eccitabilità sensoriale ovarica nella fisiopatologia della follicologenesi - The Nova Study” Supported by Ministero per l’Università e la ricerca (MUR) by PRIN 2022 program (202294JF88). (Principal investigator: Bernard Fioretti)

2021-2022 “Studio del rapporto struttura-funzione della proteina E di SARS-CoV-2 per lo sviluppo di agenti terapeutici nel trattamento del Covid-19” Supported by Ministero per l’Università e la ricerca (MUR) by PRIN 2020 program (FISR2020IP_03461). (Principal investigator: Bernard Fioretti)

2021- “Studio dell’impatto delle radiazioni nelle missioni spaziali e del potenziale terapeutico del resveratrolo sulla fisiologia della riproduzione femminile” Supported by Agenzia Spaziale Italiana (ASI). Eligible for funding, pending ranking list update. (Principal investigator: Bernard fioretti).

2019 – “Accordo quadro con S&R Farmaceutici S.p.A.” (Third mission activity).

2018-2022 “Exploring novel approaches to NOTCH1 targeting as therapy for chronic lymphocytic leukemia” Supported by AIRC (External collaborator).

2015-2019 “Novel nanoparticles-based approach to brain cancer therapy” Supported by Ministero dell’Istruzione, dell’Università e della Ricerca (MIUR) SIR, Scientific Independence of young Researchers, 2014 (RBSI144EUA) Principal Investigator: Bernard Fioretti.

2015-2019 “Origin of Chiral Discrimination” Supported by Ministero dell’Istruzione, dell’Univeristà e della Ricerca (MIUR) SIR, Scientific Independence of young Researchers, 2014 (RBSI14U3VF) Principal Investigator: Federico Palazzetti.

 Recent Publications

1. Adamo, F.M.; Silva Barcelos, E.C.; De Falco, F.; Dorillo, E.; Rompietti, C.; Sorcini, D.; Stella, A.; Del Papa, B.; Baldoni, S.; Esposito, A.; Geraci, C.; Arcaleni, R.; Pennetta, C.; Ragonese, F.; Moretti, L.; Mameli, M.; Di Ianni, M.; Rosati, E.; Fioretti, B. and Sportoletti, P.
Therapeutic Targeting Potential of Novel Silver Nanoparticles Coated with Anti-CD20 Antibody against Chronic Lymphocytic Leukemia. Cancers (2023) 15 3618.
DOI: 10.3390/cancers15143618

2. Caglioti, C., Iannitti, R., Ceccarelli, G., Selan, L., Artini, M., Papa, R., Malvasi, A., Gentile, R., Del Bianco, D., Apone, F., Angelini, P., Palazzetti, F. and Fioretti B.
Cranberry/Chondroitin Sulfate Co-precipitate as a New Method for Controlling Urinary Tract Infections, Antibiotics (2023) 12 (6) 1053.
DOI: 10.3390/antibiotics12061053

3. Zucchi, A., Claps, F., Pastore, A.L., Perotti, A., Biagini, A., Sallicandro, L., Gentile, R., Caglioti, C., Palazzetti, F., Fioretti, B.
Focus on the Use of Resveratrol in Bladder Cancer, International Journal of Molecular Sciences(2023) 24 (5), art. no. 4562, . Cited 1 time.
DOI: 10.3390/ijms24054562

4. Bachmann, M., Rossa, A., Varanita, T., Fioretti, B., Biasutto, L., Milenkovic, S., Checchetto, V., Peruzzo, R., Ahmad, S.A., Patel, S.H., Lukowski, R., Edwards, M.J., Ceccarelli, M., Gulbins, E., Zoratti, M., Mattarei, A., Szabo, I.
Pharmacological targeting of the mitochondrial calcium-dependent potassium channel KCa3.1 triggers cell death and reduces tumor growth and metastasis in vivo, Cell Death and Disease (2022) 13 (12), art. no. 1055, .
DOI: 10.1038/s41419-022-05463-8

5. Caglioti, C., Monarca, L., Pennetta, C., Ragonese, F., Palazzetti, F., Fioretti, B.
Exploring the potential energy surface of interacting pairs of Ag dimers
AIP Conference Proceedings(2022) 2611, art. no. 020012, .
DOI: 10.1063/5.0119913

6. Battaglia, R., Caponnetto, A., Caringella, A.M., Cortone, A., Ferrara, C., Smirni, S., Iannitti, R., Purrello, M., D’amato, G., Fioretti, B., Di Pietro, C.
Resveratrol Treatment Induces Mito-miRNome Modification in Follicular Fluid from Aged Women with a Poor Prognosis for In Vitro Fertilization Cycles, Antioxidants
(2022) 11 (5), art. no. 1019, .
DOI: 10.3390/antiox11051019

7. Caglioti, C., Palazzetti, F., Monarca, L., Lobello, R., Ceccarini, M.R., Iannitti, R.G., Russo, R., Ragonese, F., Pennetta, C., De Luca, A., Codini, M., Fioretti, B.
LY294002 Inhibits Intermediate Conductance Calcium-Activated Potassium (KCa3.1) Current in Human Glioblastoma Cells, Frontiers in Physiology (2022) 12, art. no. 790922, .
DOI: 10.3389/fphys.2021.790922

8. Ceccarini, M.R., Codini, M., Cataldi, S., Fioretti, B., Brecchia, G., Albi, E., Beccari, T.
Licium Barbarum cultivated in Italy: Chemical characterization and nutritional evaluation, Italian Journal Food of Science (2022) 34 (3), pp. 59-65.
DOI: 10.15586/ijfs.v34i3.2242

9. Caglioti, C., De Luca, A., Pennetta, C., Monarca, L., Ragonese, F., Sabbatini, P., Lago, M.N.F., Lombardi, A., Palazzetti, F., Fioretti, B.
A Theoretical Study on trans-Resveratrol - Cu(I) Complex, Lecture Notes in Computer Sciences (2022) 13382 LNCS, pp. 237-248.
DOI: 10.1007/978-3-031-10592-0_18

10. Gerli, S., Della Morte, C., Ceccobelli, M., Mariani, M., Favilli, A., Leonardi, L., Lanti, A., Iannitti, R.G., Fioretti, B.
Biological and clinical effects of a resveratrol-based multivitamin supplement on intracytoplasmic sperm injection cycles: a single-center, randomized controlled trial, Journal of Maternal-Fetal and Neonatal Medicine (2022) 35 (25), pp. 7640-7648.
DOI: 10.1080/14767058.2021.1958313

11. Ragonese, F., Monarca, L., De Luca, A., Mancinelli, L., Mariani, M., Corbucci, C., Gerli, S., Iannitti, R.G., Leonardi, L., Fioretti, B.
Resveratrol depolarizes the membrane potential in human granulosa cells and promotes mitochondrial biogenesis, Fertility and Sterility (2021) 115 (4), pp. 1063-1073.
DOI: 10.1016/j.fertnstert.2020.08.016

12. Illiano, E., Trama, F., Zucchi, A., Iannitti, R.G., Fioretti, B., Costantini, E.
Resveratrol‐based multivitamin supplement increases sperm concentration and motility in idiopathic male infertility: A pilot clinical study, Journal of Clinical Medicine (2020) 9 (12), art. no. 4017, pp. 1-10.
DOI: 10.3390/jcm9124017

13. Iannitti, R.G., Floridi, A., Lazzarini, A., Tantucci, A., Russo, R., Ragonese, F., Monarca, L., Caglioti, C., Spogli, R., Leonardi, L., De Angelis, M., Palazzetti, F., Fioretti, B.
Resveratrol Supported on Magnesium DiHydroxide (Resv@MDH) Represents an Oral Formulation of Resveratrol With Better Gastric Absorption and Bioavailability Respect to Pure Resveratrol, Frontiers in Nutrition (2020) 7, art. no. 570047.
DOI: 10.3389/fnut.2020.570047

14. Menchetti, L., Curone, G., Andoni, E., Barbato, O., Troisi, A., Fioretti, B., Polisca, A., Codini, M., Canali, C., Vigo, D., Brecchia, G.
Impact of goji berries (Lycium barbarum) supplementation on the energy homeostasis of rabbit does: Uni‐ and multivariate approach, Animals (2020) 10 (11), art. no. 2000, pp. 1-19.
DOI: 10.3390/ani10112000

15. Cataldi, S., Arcuri, C., Lazzarini, A., Nakashidze, I., Ragonese, F., Fioretti, B., Ferri, I., Conte, C., Codini, M., Beccari, T., Curcio, F., Albi, E.
Effect of 1α,25(OH)2 vitamin D3 in mutant P53 glioblastoma cells: Involvement of neutral sphingomyelinase1, Cancers(2020) 12 (11), art. no. 3163, pp. 1-15.
DOI: 10.3390/cancers12113163

16. Menchetti, L., Brecchia, G., Branciari, R., Barbato, O., Fioretti, B., Codini, M., Bellezza, E., Trabalza-Marinucci, M., Miraglia, D.
The effect of Goji berries (Lycium barbarum) dietary supplementation on rabbit meat quality, Meat Science (2020) 161, art. no. 108018.
DOI: 10.1016/j.meatsci.2019.108018

17. Naureen, Z., Perrone, M., Paolacci, S., Maltese, P.E., Dhuli, K., Kurti, D., Dautaj, A., Miotto, R., Casadei, A., Fioretti, B., Beccari, T., Romeo, F., Bertelli, M.
Genetic test for the personalization of sport training, Acta Biomedica (2020) 91, art. no. e2020012, pp. 1-15.
DOI: 10.23750/abm.v91i13-S.10593

18. Dionigi, L., Ragonese, F., Monarca, L., Covino, S., de Luca, A., Iannitti, R.G., Bastioli, F., Moulas, A.N., Allegretti, M., Fioretti, B.
Focus on the use of resveratrol as an adjuvant in glioblastoma therapy, Current Pharmaceutical Design (2020) 26 (18), pp. 2102-2108.
DOI: 10.2174/1381612826666200401085634

19. Manfroni, G., Ragonese, F., Monarca, L., Astolfi, A., Mancinelli, L., Iannitti, R.G., Bastioli, F., Barreca, M.L., Cecchetti, V., Fioretti, B.
New insights on kca3.1 channel modulation, Current Pharmaceutical Design (2020) 26 (18), pp. 2096-2101.
DOI: 10.2174/1381612826666200316152645

The training objectives that the PhD course in Biological and Natural Sciences aims to develop are:

Year 1
  • Acquisition of theoretical and experimental knowledge through lectures and laboratory activities.
Year 2
  • Development of the research project,
  • Participation in conferences,
  • Involvement in educational and training activities.
Year 3
  • Involvement in educational and training activities,
  • Research and preparation of the experimental thesis.

These objectives will also be complemented with teaching and research activities for the thesis, both at the institution and abroad.

PhD Training Plan (download)

 The doctoral student will establish the training plan in agreement with the supervising professor. The training plan (180 credits) consists of:

  1. a) Carrying out, under the guidance of a supervisor, an individual research program approved by the PhD board and related to a disciplinary field within those provided by the PhD Course. The research activities carried out by the PhD student must be presented at the end of the three years in at least 3 scientific publications submitted to international indexed journals (ISI-SCOPUS journals), of which at least one already accepted for publication. At least in one paper the PhD student has to be the first author or corresponding author. The research program must include a period abroad at a certified University/research institution lasting at least six months (even non-continuous).
  2. b) Engaging in complementary educational and training activities useful to carry out the research activity, in which the PhD student must earn at least 30 credits. These activities include:
  3. Attendance (and passing of any final exams) of specific courses (activities A and B, Tables A and B at the end of this file) on topics related to the two curricula of the PhD organized within the framework of the PhD in Biological and Naturalistic Sciences or other equivalent courses organized by other doctoral programs, including those abroad. The number of ECTS credits that can be acquired is indicated next to each course in the table. At the end of the three years the PhD student has to gain at least 12 ECTS belonging to activities A and B.
  4. Attendance (and passing of final exams) of courses related to soft skills (Table C, Table at the end of this file). The number of ECTS credits that can be acquired is indicated next to each course on the calendar. At the end of the three years the PhD student has to gain at least 6 ECTS belonging to activities C.
  5. Participation to the Summer School organized by the PhD board or to any other national or international schools related to the themes of the two curricula of the PhD (1 ECTS credits per day) or to national (0.5 ECTS credits per day) or international (1 ECTS credits per day) conferences on topics related to the two curricula of the PhD (activity D). At the end of the three years the PhD student has to gain at least 3 ECTS belonging to activities D.
  6. Participation to national (0. 5 ECTS per 6 hour) or international (1 ECTS per 6 hour) seminars (activity D) given by members of the PhD board of the PhD topics or by national and international experts on topics related to the two curricula of the PhD course.
  7. Scientific dissemination activities (scientific oral presentation personally given by the doctoral student) are recommended (no credits for this activity).
  8. The doctoral student can engage in supplementary teaching activities, didattica integrativa (maximum 30 hours each year) or tutoring activities (terza missione o tutoraggio) (maximum 30 hours each year) (no credits for this activity).
  9. At the end of the PhD program, the PhD student must have obtained an English language certificate at level C1. Phd students have the opportunity to participate in foreign language courses at the University's Language Center (CLA) and obtain certified assessment in individual language skills.

All training activities organized and/or suggested by the PhD program will be scheduled on the PhD website and communicated to students and PhD board via email. At the following link each student can find useful information about the PhD course in UNIPG https://www.unipg.it/didattica/percorsi-post-laurea/dottorati-di-ricerca

  At the beginning of the PhD course (within the first 4 months), each PhD student presents its Individual training plan containing the research activities he intends to pursue and the educational activities he intends to follow. Before the 10 October of each academic year, the PhD student must submit to the coordinator the Annual Report (first/second) report concerning all the training and research activities carried out; the report, shared with the tutor, consists of a file containing the research results achieved within the framework of the PhD project and a brief report on other training and supplementary teaching/tutoring activities carried out during the same period, along with the report related to the credits obtained in the training activities. The reports will be evaluated by the PhD board, which, after consulting with the PhD student and the tutor regarding progress in thesis development, will, in case of a positive evaluation, allocate the respective credits (up to 30-40 ECTS credits for the annual report on research activities and/or thesis writing). The individual Phd course ends with the writing of the thesis. The thesis, written in English, must contribute to advancing knowledge or methodologies in the chosen field of study.

PhD students have a budget for research activities in Italy and abroad, with an amount not less than 10% of the scholarship. This amount is managed directly by the Department to which the doctoral program belongs. The research budget can be used for reimbursement of expenses incurred for missions or conference registrations, seminars, schools, expenses for thesis preparation, expenses for organizing seminars and conferences with external lecturers, purchase of consumables, services, and maintenance of equipment and instruments. In this context, a small amount of euros per doctoral student can be used for organizing the annual Summer School of the PhD in Biological and Natural Sciences (held every year) and other activities aimed at implementing the individual training plan of the PhD students.

Director: Prof. Alceo Macchioni, +39.075.585.5579, This email address is being protected from spambots. You need JavaScript enabled to view it.

Vice-Director: Prof.ssa Carla Emiliani, +39.075.585.7436, This email address is being protected from spambots. You need JavaScript enabled to view it.

Administration: Dr. Cristina Mencolini, +39.075.585.5504, This email address is being protected from spambots. You need JavaScript enabled to view it.

Department Board

Department Council

 

Comitato dipartimentale VQR (C-Dip VQR):

Scientific Research Coordinator: Prof. David Michele Cappelletti

Third Mission: Prof. Luigi Vaccaro

Members: Proff. Cristiano Zuccaccia, Marco Paolantoni, Hovirag Lancioni, Silvana Piersanti

K-users: Dott.ssa Daniela Bonelli, Dott. Gianandrea La Porta

 

Administrative office: This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Patrizia Celesti, +39.075.585.5700, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Silvana Tifi, +39.075.585.5700, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Nicoletta Tomassini, +39.075.585.5505, This email address is being protected from spambots. You need JavaScript enabled to view it.

Dr. Elisabetta Vescarelli, +39.075.585.5505, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Teaching office: This email address is being protected from spambots. You need JavaScript enabled to view it.

Dott.ssa Mariangela Aguzzi, +39.075.585.5635, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Lorena Canonico, +39.075.585.5633, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Claudia Mastroforti, +39.075.585.5643 This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Reception (from Monday to Friday, from 7.30 to 19.30)

Elce (via Elce di Sotto, 8):

Sig. Leonardo Mortini, +39.075.585.5604, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig. Paolo Mazzola, +39.075.585.5604, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig. Marco Berta, +39.075.585.5604, This email address is being protected from spambots. You need JavaScript enabled to view it.

Giochetto (via del Giochetto):


Sig. Gianni Norgini, +39.075.585.7495, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Lidia Bucciferro, +39.075.585.7343, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig. Lucio Burani, +39.075.585.7495, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig.ra Flavia Passeri, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

General Services:

Catalogo della ricerca IRIS - Supporto alla ricerca

Dr. Daniela Bonelli (Referente Area Chimica), +39.075.585.5550-5613, This email address is being protected from spambots. You need JavaScript enabled to view it.

Dr. Gianandrea La Porta (Referente Area Biologia), +39.075.585.5710, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Servizio smaltimento rifiuti - Laboratori chimici (SISTRI)

Dr. Antonio Cinti

Sig. Andrea Nicoziani

 

Servizio smaltimento rifiuti - Laboratori biologici (SISTRI)

Dr. Loretta Mancinelli

 

Servizi Informatici

Dr. Carlo Manuali, +39.075.585.5213, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Servizio Acquisto Alcooli per i Laboratori Biologici

Dr. Silvia Belia, +39.075.585.5761, This email address is being protected from spambots. You need JavaScript enabled to view it.

Sig. Antonello Sotgiu, +39.075.585.5721, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Servizio Acquisto Alcooli per i Laboratori Chimici

Sig. Remo Suriani, +39.075.585.5519, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Laboratorio Meccanico (piano 2° seminterrato edificio B)

Sig. Andrea Nicoziani, +39.075.585.5603, This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Servizio Gas Centralizzati

Sig. Nicomede Pelliccia, +39.075.585.5571, This email address is being protected from spambots. You need JavaScript enabled to view it.

Please visit the new version of LipiOne 2.0 at lipidone.eu.

Description

GENERAL DESCRIPTION

L1 MARK ONLYLipidOne, a freely available software that processes lipidomics data to help researchers to find new relationships between lipid profile and the activity of enzymes/genes involved.

LipidOne, automatically highlights all qualitative and quantitative changes in lipid building blocks both among all detected lipid classes and among experimental groups.  Thanks to LipiOne, the discovered differences in lipid building blocks can be easily linked to the activity of specific enzyme classes and or gene expression.

CITATION

Please, cite our work as:

Roberto Maria Pellegrino, Matteo Giulietti, Husam B R Alabed, Sandra Buratta, Lorena Urbanelli, Francesco Piva, Carla Emiliani, LipidOne: user-friendly lipidomic data analysis tool for a deeper interpretation in a systems biology scenario, Bioinformatics, 2021; btab867, https://doi.org/10.1093/bioinformatics/btab867

CONTACT

For general questions concerning the use of the software please contact Roberto Maria Pellegrino (This email address is being protected from spambots. You need JavaScript enabled to view it.)

For problems with installation, operation, software compatibility contact Matteo Giulietti (This email address is being protected from spambots. You need JavaScript enabled to view it.)

Download

Click here to download

LipidOne is an executable file that does not require installation. Follow the instructions below and try working with our example datasets.

Instruction:

a) For the first time only, the user must install the Gnuplot graphics libraries. They can be downloaded free of charge from: https://sourceforge.net/projects/gnuplot/files/gnuplot/5.4.2;

b) Download LipidOne and place it in a folder of the user's choice.

c) Double click on the icon to start LipidOne.

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*) We would like to thank Dmitry Karasik and colleagues for the development of the Perl Prima library (http://www.prima.eu.org/), which we used for the development of the Graphical User Interface of LipidOne.

**) We also thank Thomas Williams and colleagues for their GNUPLOT graphical library (http://www.gnuplot.info/), useful for the creation of the LipidOne bar graphs.

Dataset

Try and explore some example datasets with LipidOne.

RETINA: Trzeciecka, A. et al. (2019) Comparative lipid profiling dataset of the inflammation-induced optic nerve regeneration. Data in Brief, 2352-3409.

FUNGUS: Lipid profiling of fungus (our internal, unpublished results).

ALGAE: Lipid profiling of algae from Riken Demonstration Files (http://prime.psc.riken.jp/compms/msdial/main.html).

Note: If the lipid annotation of your dataset does not comply with the LSI guidelines*, you can convert your data with LipidLynxX Converter.

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*) Liebisch,G. et al. (2020) Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures. Journal of Lipid Research, 61, 1539-1555.

How to use

lipidoneThree-step LipidOne workflow

1) Data upload: the user must select a data matrix (txt or csv tab delimited file) containing the names and concentrations in each lipid sample detected (see example dataset). The accepted lipid nomenclature is the "molecular species level" or "sn-position level" as reported by the Lipidomics Standards Initiative (LSI) Guidelines.

2) Query selection: The user starts to explore the dataset using seven types of analysis and dynamic context-dependent menus.

3) Get results: all graphs and tables can be exported.

Click here to download the quick guide 

License

GENERAL STATEMENT

LipidOne is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

DISCLAIMER

LipidOne is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

CONTACT

For general questions concerning the use of the software please contact Roberto Maria Pellegrino (This email address is being protected from spambots. You need JavaScript enabled to view it.)

For problems with installation, operation, software compatibility contact Matteo Giulietti (This email address is being protected from spambots. You need JavaScript enabled to view it.)

XXXVIII cycle - A.A. 2022/23, 2023/24 and 2024/2025 (also valid for XXXVI and XXXVII cycles)

List of the ad-Hoc Courses Offered

List of the scientific Seminars offered for the PhD cycles XXXVIII, XXXVII and XXXVI

Biodiversity and Ecology (Prof. Roberto Venanzoni)

Biochemical and Biotechnological Sciences (Prof. Carla Emiliani)

Bio-Molecular Diversity & Evolutionary Biology (Prof. Ines Di Rosa)

Molecular Physiology (Prof. Luigi Catacuzzeno)

Computing, Theory and Experiments of Dynamics and Kinetics Studies for Chemical Processes (Prof. Fernando Pirani)

Molecular Spectroscopy (Prof. Assunta Morresi)

Environmental Chemistry and Technologies (Prof. David Cappelletti)

Catalysis for Energy (Prof. Alceo Macchioni)

Green S.O.C. (Prof. Luigi Vaccaro)

Materials for Artworks' Conservation (Prof. Aldo Romani)

Photophysics and Photochemistry (Prof. Fausto Elisei)

Plant Physiology Lab (Prof. Stefania Pasqualini)

Design, Synthesis and Properties of Compounds with Potential Pharmaceutical Interest (Prof. Gabriele Cruciani)

Theoretical and Computational Inorganic Chemistry (Prof. Filippo De Angelis)

Integrated Physiology and Preclinic (Prof. Bernard Fioretti)

Collegio docenti

NameDepartment/ StructureTitleScopus
Author ID
CUN
area
SectorSSD
BECCARI Tommaso SCIENZE
FARMACEUTICHE
Associate professor 57201650651 5 05/E1 BIO/10
BELLEZZA Ilaria Medicina e Chirurgia Associate professor
(L. 240/10)
8907605700 5 05/E1 BIO/10
CAMILLONI Barbara Medicina e Chirurgia Assistent professor 8289035100 6 06/A3 MED/07
CATACUZZENO Luigi CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Associate professor
(L. 240/10)
6602569758 5 05/D1 BIO/09
CAVALIERE Gina SCIENZE
FARMACEUTICHE
Researcher in tenure-track - t.pieno (art. 24 c.3-b L.
240/10)
25959951300 5 05/D1 BIO/09
ELIA Antonia Concetta CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Associate professor
(L. 240/10)
7005199761 5 05/C1 BIO/07
FABIANI Roberto CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Associate professor 6603668970 6 06/M1 MED/42
FEDERICI Ermanno CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Assistent professor 22833928000 5 05/I2 BIO/19
GORETTI Enzo CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Assistent professor 6508304230 5 05/B1 BIO/05
LANCIONI Hovirag CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Associate professor
(L. 240/10)
6507657468 5 05/I1 BIO/18
LORENZONI Massimo CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Assistent professor 7004928503 5 05/C1 BIO/07
LUDOVISI Alessandro CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Assistent professor 21035027200 5 05/C1 BIO/07
MARCONI Gianpiero SCIENZE
AGRARIE,
ALIMENTARI E
AMBIENTALI
Assistent professor 8584904100 7 07/E1 AGR/07
MICHELUCCI Antonio CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Researcher in tenure-track - t.pieno (art. 24 c.3-b L.
240/10)
56684733500 5 05/D1 BIO/09
PIERSANTI Silvana CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Associate professor
(L. 240/10)
16302162100 5 05/B1 BIO/05
PIETRELLA Donatella Medicina e Chirurgia Assistent professor 6604055540 6 06/A3 MED/07
REBORA Manuela CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Full professor
(L. 240/10)
6701644978 5 05/B1 BIO/05
ROSIGNOLI Patrizia CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Associate professor
(L. 240/10)
6603610914 6 06/M1 MED/42
TRAINA Giovanna SCIENZE
FARMACEUTICHE
Associate professor
(L. 240/10)
7006371505 5 05/D1 BIO/09
VENANZONI Roberto CHIMICA,
BIOLOGIA E
BIOTECNOLOGIE
Full professor 6506711723 5 05/A1 BIO/03